Pakket: bwa (0.7.18-1 en anderen)

[ Bron: bwa  ]

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

Andere aan bwa gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf, hppa, m68k, sh4]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

• rec: perl

  Larry Wall's Practical Extraction and Report Language

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

bwa downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.7.18-1	211,7 kB	512,0 kB	[overzicht]
amd64	0.7.18-1	206,9 kB	459,0 kB	[overzicht]
arm64	0.7.18-1	193,6 kB	447,0 kB	[overzicht]
armel	0.7.18-1	194,1 kB	438,0 kB	[overzicht]
armhf	0.7.18-1	193,3 kB	326,0 kB	[overzicht]
hppa (unofficial port)	0.7.18-1	226,8 kB	511,0 kB	[overzicht]
i386	0.7.18-1	231,1 kB	522,0 kB	[overzicht]
ia64 (unofficial port)	0.7.17-7+b4	280,4 kB	925,0 kB	[overzicht]
m68k (unofficial port)	0.7.18-1	205,3 kB	470,0 kB	[overzicht]
mips64el	0.7.18-1	204,7 kB	526,0 kB	[overzicht]
ppc64 (unofficial port)	0.7.18-1	219,7 kB	575,0 kB	[overzicht]
ppc64el	0.7.18-1	230,2 kB	575,0 kB	[overzicht]
riscv64	0.7.18-1	214,6 kB	375,0 kB	[overzicht]
s390x	0.7.18-1	222,8 kB	511,0 kB	[overzicht]
sh4 (unofficial port)	0.7.18-1	276,1 kB	447,0 kB	[overzicht]
sparc64 (unofficial port)	0.7.18-1	185,3 kB	1.091,0 kB	[overzicht]
x32 (unofficial port)	0.7.18-1	217,6 kB	474,0 kB	[overzicht]