Package: bwa (0.7.18-1 and others)

Links for bwa

Debian Resources:

Download Source Package bwa:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Carlos Borroto (QA Page)
Ognyan Kulev (QA Page)
Michael R. Crusoe (QA Page)

External Resources:

Homepage [bio-bwa.sourceforge.net]

Similar packages:

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

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GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.39) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

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also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: zlib1g (>= 1:1.1.4) [not armel, armhf, hppa, m68k, sh4]

compression library - runtime

dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

rec: perl

Larry Wall's Practical Extraction and Report Language

sug: samtools

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Download bwa

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.18-1	211.7 kB	512.0 kB	[list of files]
amd64	0.7.18-1	206.9 kB	459.0 kB	[list of files]
arm64	0.7.18-1	193.6 kB	447.0 kB	[list of files]
armel	0.7.18-1	194.1 kB	438.0 kB	[list of files]
armhf	0.7.18-1	193.3 kB	326.0 kB	[list of files]
hppa (unofficial port)	0.7.18-1	226.8 kB	511.0 kB	[list of files]
i386	0.7.18-1	231.1 kB	522.0 kB	[list of files]
ia64 (unofficial port)	0.7.17-7+b4	280.4 kB	925.0 kB	[list of files]
m68k (unofficial port)	0.7.18-1	205.3 kB	470.0 kB	[list of files]
mips64el	0.7.18-1	204.7 kB	526.0 kB	[list of files]
ppc64 (unofficial port)	0.7.18-1	219.7 kB	575.0 kB	[list of files]
ppc64el	0.7.18-1	230.2 kB	575.0 kB	[list of files]
riscv64	0.7.18-1	214.6 kB	375.0 kB	[list of files]
s390x	0.7.18-1	222.8 kB	511.0 kB	[list of files]
sh4 (unofficial port)	0.7.18-1	276.1 kB	447.0 kB	[list of files]
sparc64 (unofficial port)	0.7.18-1	185.3 kB	1,091.0 kB	[list of files]
x32 (unofficial port)	0.7.18-1	217.6 kB	474.0 kB	[list of files]