Pakket: samtools (1.20-3 en anderen)

[ Bron: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andere aan samtools gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libhts3t64 (>= 1.17) [ia64]

  C library for high-throughput sequencing data formats

  dep: libhts3t64 (>= 1.20~) [niet ia64]

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf, hppa, i386, m68k, sh4]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, i386, m68k, sh4]

• sug: cwltool

  Common Workflow Language reference implementation

samtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.20-3	633,1 kB	1.804,0 kB	[overzicht]
amd64	1.20-3	637,6 kB	1.409,0 kB	[overzicht]
arm64	1.20-3+b1	613,9 kB	1.674,0 kB	[overzicht]
armel	1.20-3	601,7 kB	1.330,0 kB	[overzicht]
armhf	1.20-3	605,0 kB	1.146,0 kB	[overzicht]
hppa (unofficial port)	1.20-3	634,3 kB	1.371,0 kB	[overzicht]
i386	1.20-3	672,3 kB	1.538,0 kB	[overzicht]
ia64 (unofficial port)	1.19.2-1+b1	716,1 kB	2.112,0 kB	[overzicht]
m68k (unofficial port)	1.20-3	612,5 kB	1.354,0 kB	[overzicht]
mips64el	1.20-3	615,2 kB	1.824,0 kB	[overzicht]
ppc64 (unofficial port)	1.20-3	652,6 kB	1.929,0 kB	[overzicht]
ppc64el	1.20-3	662,7 kB	1.929,0 kB	[overzicht]
riscv64	1.20-3	647,5 kB	1.281,0 kB	[overzicht]
s390x	1.20-3	643,8 kB	1.485,0 kB	[overzicht]
sh4 (unofficial port)	1.20-3	694,6 kB	1.668,0 kB	[overzicht]
sparc64 (unofficial port)	1.20-3	601,8 kB	7.765,0 kB	[overzicht]
x32 (unofficial port)	1.20-3	641,9 kB	1.378,0 kB	[overzicht]