Pakket: samtools (1.21-1 en anderen)

[ Bron: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andere aan samtools gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libhts3t64 (>= 1.17) [ia64]

  C library for high-throughput sequencing data formats

  dep: libhts3t64 (>= 1.21) [niet ia64]

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [niet alpha, armel, armhf, hppa, i386, m68k, sh4]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [alpha, armel, armhf, hppa, i386, m68k, sh4]

• sug: cwltool

  Common Workflow Language reference implementation

samtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.21-1	645,2 kB	1.874,0 kB	[overzicht]
amd64	1.21-1	651,5 kB	1.447,0 kB	[overzicht]
arm64	1.21-1	622,5 kB	1.679,0 kB	[overzicht]
armel	1.21-1	614,7 kB	1.672,0 kB	[overzicht]
armhf	1.21-1	617,9 kB	1.544,0 kB	[overzicht]
hppa (unofficial port)	1.21-1	647,1 kB	1.387,0 kB	[overzicht]
i386	1.21-1	683,3 kB	1.572,0 kB	[overzicht]
ia64 (unofficial port)	1.19.2-1+b1	716,1 kB	2.112,0 kB	[overzicht]
m68k (unofficial port)	1.21-1	619,4 kB	1.368,0 kB	[overzicht]
mips64el	1.21-1	630,8 kB	1.894,0 kB	[overzicht]
ppc64 (unofficial port)	1.21-1	665,4 kB	1.935,0 kB	[overzicht]
ppc64el	1.21-1	677,4 kB	1.935,0 kB	[overzicht]
riscv64	1.21-1	657,6 kB	1.299,0 kB	[overzicht]
s390x	1.21-1	655,9 kB	1.507,0 kB	[overzicht]
sh4 (unofficial port)	1.21-1	708,9 kB	1.674,0 kB	[overzicht]
sparc64 (unofficial port)	1.21-1	614,2 kB	7.771,0 kB	[overzicht]
x32 (unofficial port)	1.21-1	655,3 kB	1.416,0 kB	[overzicht]