Package: bwa (0.7.18-1 and others)

[ Source: bwa  ]

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, interface::text-mode, role::program, Purpose: Analysing, Comparing

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Download bwa

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.18-1	211.7 kB	512.0 kB	[list of files]
amd64	0.7.18-1	206.9 kB	459.0 kB	[list of files]
arm64	0.7.18-1	193.6 kB	447.0 kB	[list of files]
armel	0.7.18-1	194.1 kB	438.0 kB	[list of files]
armhf	0.7.18-1	193.3 kB	326.0 kB	[list of files]
hppa (unofficial port)	0.7.18-1	226.8 kB	511.0 kB	[list of files]
i386	0.7.18-1	231.1 kB	522.0 kB	[list of files]
ia64 (unofficial port)	0.7.17-7+b4	280.4 kB	925.0 kB	[list of files]
m68k (unofficial port)	0.7.18-1	205.3 kB	470.0 kB	[list of files]
mips64el	0.7.18-1	204.7 kB	526.0 kB	[list of files]
ppc64 (unofficial port)	0.7.18-1	219.7 kB	575.0 kB	[list of files]
ppc64el	0.7.18-1	230.2 kB	575.0 kB	[list of files]
riscv64	0.7.18-1	214.6 kB	375.0 kB	[list of files]
s390x	0.7.18-1	222.8 kB	511.0 kB	[list of files]
sh4 (unofficial port)	0.7.18-1	276.1 kB	447.0 kB	[list of files]
sparc64 (unofficial port)	0.7.18-1	185.3 kB	1,091.0 kB	[list of files]
x32 (unofficial port)	0.7.18-1	217.6 kB	474.0 kB	[list of files]