Paket: bali-phy (4.0-1 ve diğerleri)

[ Kaynak: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

bali-phy ile İlgili Diğer Paketler

• dep: libboost-chrono1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]

  C++ representation of time duration, time point, and clocks

• dep: libboost-chrono1.83.0t64 (>= 1.83.0) [ia64, x32 değil]

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [hppa, m68k]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-json1.83.0 (>= 1.83.0) [hppa, ia64, m68k, x32 değil]

  C++ containers and algorithms that implement JSON

• dep: libboost-program-options1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]

  program options library for C++

• dep: libboost-program-options1.83.0 (>= 1.83.0) [ia64, x32 değil]

  program options library for C++

• dep: libboost-random1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-random1.74.0 (>= 1.74.0) [ia64]

  Boost Random Number Library

• dep: libboost-random1.83.0 (>= 1.83.0) [ia64, x32 değil]

  Boost Random Number Library

• dep: libc6 (>= 2.29) [x32]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.38) [alpha, ia64, loong64, x32 değil]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libfmt10 (>= 10.1.1+ds1) [hppa, ia64, m68k, x32 değil]

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 14.2.0-17) [loong64]

  GCC support library

  dep: libgcc-s1 (>= 3.0) [s390x]

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, sparc64, x32]

  dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [alpha, ia64, m68k, x32 değil]

  dep: libstdc++6 (>= 14.2.0-18) [alpha]

  dep: libstdc++6 (>= 9) [ia64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

bali-phy indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	4.0-1	9.258,5 kB	53.434,0 kB	[dosya listesi]
amd64	4.0-1	9.822,0 kB	52.710,0 kB	[dosya listesi]
arm64	4.0-1	8.730,3 kB	47.950,0 kB	[dosya listesi]
hppa (resmi olmayan port)	3.6.1+dfsg-3	6.226,6 kB	37.832,0 kB	[dosya listesi]
i386	4.0-1	9.253,0 kB	51.011,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	3.6.1+dfsg-1	9.006,8 kB	69.870,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	4.0-1	9.159,7 kB	50.162,0 kB	[dosya listesi]
m68k (resmi olmayan port)	3.6.1+dfsg-3	5.450,2 kB	34.598,0 kB	[dosya listesi]
mips64el	4.0-1	8.919,8 kB	58.594,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	4.0-1	9.151,4 kB	57.742,0 kB	[dosya listesi]
ppc64el	4.0-1	9.592,2 kB	56.065,0 kB	[dosya listesi]
riscv64	4.0-1	10.112,1 kB	41.347,0 kB	[dosya listesi]
s390x	4.0-1	7.548,7 kB	48.143,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	4.0-1	8.190,5 kB	89.680,0 kB	[dosya listesi]
x32 (resmi olmayan port)	3.5.0.1+dfsg-1	5.788,7 kB	33.442,0 kB	[dosya listesi]