[ 原始碼： bali-phy ]
套件：bali-phy（4.0-1 以及其他的）
Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.
其他與 bali-phy 有關的套件
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- dep: libboost-chrono1.71.0 [x32]
- 套件暫時不可用
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- dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]
- C++ representation of time duration, time point, and clocks
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- dep: libboost-chrono1.83.0t64 (>= 1.83.0) [除 ia64, x32]
- C++ representation of time duration, time point, and clocks
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- dep: libboost-filesystem1.71.0 [x32]
- 套件暫時不可用
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- dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-filesystem1.83.0 (>= 1.83.0) [hppa, m68k]
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-json1.83.0 (>= 1.83.0) [除 hppa, ia64, m68k, x32]
- C++ containers and algorithms that implement JSON
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- dep: libboost-program-options1.71.0 [x32]
- 套件暫時不可用
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- dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]
- program options library for C++
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- dep: libboost-program-options1.83.0 (>= 1.83.0) [除 ia64, x32]
- program options library for C++
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- dep: libboost-random1.71.0 [x32]
- 套件暫時不可用
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- dep: libboost-random1.74.0 (>= 1.74.0) [ia64]
- Boost Random Number Library
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- dep: libboost-random1.83.0 (>= 1.83.0) [除 ia64, x32]
- Boost Random Number Library
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- dep: libc6 (>= 2.29) [x32]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.38) [除 alpha, ia64, loong64, x32]
- dep: libc6 (>= 2.40) [loong64]
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- dep: libc6.1 (>= 2.31) [ia64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
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- dep: libcairo2 (>= 1.4.10)
- Cairo 2D vector graphics library
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- dep: libfmt10 (>= 10.1.1+ds1) [除 hppa, ia64, m68k, x32]
- fast type-safe C++ formatting library -- library
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- dep: libgcc-s1 (>= 14.2.0-17) [loong64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.0) [s390x]
- dep: libgcc-s1 (>= 3.4) [alpha, amd64, sparc64, x32]
- dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]
- dep: libgcc-s1 (>= 7) [i386]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
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- dep: libstdc++6 (>= 13.1) [m68k]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [除 alpha, ia64, m68k, x32]
- dep: libstdc++6 (>= 14.2.0-18) [alpha]
- dep: libstdc++6 (>= 9) [ia64, x32]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: gnuplot
- Command-line driven interactive plotting program.
同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11
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- rec: r-base
- GNU R statistical computation and graphics system
下載 bali-phy
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| alpha （非官方移植版） | 4.0-1 | 9，258。5 kB | 53，434。0 kB | [檔案列表] |
| amd64 | 4.0-1 | 9，822。0 kB | 52，710。0 kB | [檔案列表] |
| arm64 | 4.0-1 | 8，730。3 kB | 47，950。0 kB | [檔案列表] |
| hppa （非官方移植版） | 3.6.1+dfsg-3 | 6，226。6 kB | 37，832。0 kB | [檔案列表] |
| i386 | 4.0-1 | 9，253。0 kB | 51，011。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 3.6.1+dfsg-1 | 9，006。8 kB | 69，870。0 kB | [檔案列表] |
| loong64 （非官方移植版） | 4.0-1 | 9，159。7 kB | 50，162。0 kB | [檔案列表] |
| m68k （非官方移植版） | 3.6.1+dfsg-3 | 5，450。2 kB | 34，598。0 kB | [檔案列表] |
| mips64el | 4.0-1 | 8，919。8 kB | 58，594。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 4.0-1 | 9，151。4 kB | 57，742。0 kB | [檔案列表] |
| ppc64el | 4.0-1 | 9，592。2 kB | 56，065。0 kB | [檔案列表] |
| riscv64 | 4.0-1 | 10，112。1 kB | 41，347。0 kB | [檔案列表] |
| s390x | 4.0-1 | 7，548。7 kB | 48，143。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 4.0-1 | 8，190。5 kB | 89，680。0 kB | [檔案列表] |
| x32 （非官方移植版） | 3.5.0.1+dfsg-1 | 5，788。7 kB | 33，442。0 kB | [檔案列表] |