Paketti: bali-phy (4.0-1 ja muut)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Muut pakettiin bali-phy liittyvät paketit

• dep: libboost-chrono1.71.0 [x32]

  Paketti ei saatavilla

• dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]

  C++ representation of time duration, time point, and clocks

• dep: libboost-chrono1.83.0t64 (>= 1.83.0) [ei ia64, x32]

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.71.0 [x32]

  Paketti ei saatavilla

• dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [hppa, m68k]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-json1.83.0 (>= 1.83.0) [ei hppa, ia64, m68k, x32]

  C++ containers and algorithms that implement JSON

• dep: libboost-program-options1.71.0 [x32]

  Paketti ei saatavilla

• dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]

  program options library for C++

• dep: libboost-program-options1.83.0 (>= 1.83.0) [ei ia64, x32]

  program options library for C++

• dep: libboost-random1.71.0 [x32]

  Paketti ei saatavilla

• dep: libboost-random1.74.0 (>= 1.74.0) [ia64]

  Boost Random Number Library

• dep: libboost-random1.83.0 (>= 1.83.0) [ei ia64, x32]

  Boost Random Number Library

• dep: libc6 (>= 2.29) [x32]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.38) [ei alpha, ia64, loong64, x32]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libfmt10 (>= 10.1.1+ds1) [ei hppa, ia64, m68k, x32]

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 14.2.0-17) [loong64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.0) [s390x]

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, sparc64, x32]

  dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC:n apukirjasto

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libstdc++6 (>= 13.1) [m68k]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 14) [ei alpha, ia64, m68k, x32]

  dep: libstdc++6 (>= 14.2.0-18) [alpha]

  dep: libstdc++6 (>= 9) [ia64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  myös näennäispaketti, jonka toteuttaa gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

Imuroi bali-phy

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	4.0-1	9,258.5 kt	53,434.0 kt	[tiedostoluettelo]
amd64	4.0-1	9,822.0 kt	52,710.0 kt	[tiedostoluettelo]
arm64	4.0-1	8,730.3 kt	47,950.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	3.6.1+dfsg-3	6,226.6 kt	37,832.0 kt	[tiedostoluettelo]
i386	4.0-1	9,253.0 kt	51,011.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	3.6.1+dfsg-1	9,006.8 kt	69,870.0 kt	[tiedostoluettelo]
loong64 (epävirallinen siirros)	4.0-1	9,159.7 kt	50,162.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	3.6.1+dfsg-3	5,450.2 kt	34,598.0 kt	[tiedostoluettelo]
mips64el	4.0-1	8,919.8 kt	58,594.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	4.0-1	9,151.4 kt	57,742.0 kt	[tiedostoluettelo]
ppc64el	4.0-1	9,592.2 kt	56,065.0 kt	[tiedostoluettelo]
riscv64	4.0-1	10,112.1 kt	41,347.0 kt	[tiedostoluettelo]
s390x	4.0-1	7,548.7 kt	48,143.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	4.0-1	8,190.5 kt	89,680.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	3.5.0.1+dfsg-1	5,788.7 kt	33,442.0 kt	[tiedostoluettelo]