[ 源代码： bali-phy ]
软件包：bali-phy（4.0-1 以及其他的）
Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.
其他与 bali-phy 有关的软件包
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- dep: libboost-chrono1.71.0 [x32]
- 软件包暂时不可用
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- dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]
- C++ representation of time duration, time point, and clocks
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- dep: libboost-chrono1.83.0t64 (>= 1.83.0) [除 ia64, x32]
- C++ representation of time duration, time point, and clocks
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- dep: libboost-filesystem1.71.0 [x32]
- 软件包暂时不可用
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- dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-filesystem1.83.0 (>= 1.83.0) [alpha, armel, armhf, hppa, m68k]
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-json1.83.0 (>= 1.83.0) [除 alpha, armel, armhf, hppa, ia64, m68k, x32]
- C++ containers and algorithms that implement JSON
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- dep: libboost-program-options1.71.0 [x32]
- 软件包暂时不可用
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- dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]
- program options library for C++
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- dep: libboost-program-options1.83.0 (>= 1.83.0) [除 ia64, x32]
- program options library for C++
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- dep: libboost-random1.71.0 [x32]
- 软件包暂时不可用
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- dep: libboost-random1.74.0 (>= 1.74.0) [ia64]
- Boost Random Number Library
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- dep: libboost-random1.83.0 (>= 1.83.0) [除 ia64, x32]
- Boost Random Number Library
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- dep: libc6 (>= 2.29) [x32]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.38) [除 alpha, ia64, x32]
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- dep: libc6.1 (>= 2.31) [ia64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
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- dep: libcairo2 (>= 1.4.10)
- Cairo 2D 矢量图形库
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- dep: libfmt10 (>= 10.1.1+ds1) [除 alpha, armel, armhf, hppa, ia64, m68k, x32]
- fast type-safe C++ formatting library -- library
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- dep: libgcc-s1 (>= 3.0) [s390x]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [alpha, amd64, sparc64, x32]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]
- dep: libgcc-s1 (>= 7) [i386]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支持库
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支持库
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- dep: libstdc++6 (>= 13.1) [m68k]
- GNU 标准 C++ 库，第3版
- dep: libstdc++6 (>= 14) [除 alpha, ia64, m68k, x32]
- dep: libstdc++6 (>= 14.2.0-2) [alpha]
- dep: libstdc++6 (>= 9) [ia64, x32]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- rec: gnuplot
- Command-line driven interactive plotting program.
同时作为一个虚包由这些包填实： gnuplot-nox, gnuplot-qt, gnuplot-x11
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- rec: r-base
- GNU R statistical computation and graphics system
下载 bali-phy
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 3.6.1+dfsg-3 | 6,361.3 kB | 40,360.0 kB | [文件列表] |
| amd64 | 4.0-1 | 9,822.0 kB | 52,710.0 kB | [文件列表] |
| arm64 | 4.0-1 | 8,730.3 kB | 47,950.0 kB | [文件列表] |
| armel | 3.6.1+dfsg-3 | 5,076.0 kB | 32,497.0 kB | [文件列表] |
| armhf | 3.6.1+dfsg-3 | 4,629.1 kB | 23,653.0 kB | [文件列表] |
| hppa （非官方移植版） | 3.6.1+dfsg-3 | 6,226.6 kB | 37,832.0 kB | [文件列表] |
| i386 | 4.0-1 | 9,253.0 kB | 51,011.0 kB | [文件列表] |
| ia64 （非官方移植版） | 3.6.1+dfsg-1 | 9,006.8 kB | 69,870.0 kB | [文件列表] |
| m68k （非官方移植版） | 3.6.1+dfsg-3 | 5,450.2 kB | 34,598.0 kB | [文件列表] |
| mips64el | 4.0-1 | 8,919.8 kB | 58,594.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 4.0-1 | 9,151.4 kB | 57,742.0 kB | [文件列表] |
| ppc64el | 4.0-1 | 9,592.2 kB | 56,065.0 kB | [文件列表] |
| riscv64 | 4.0-1 | 10,112.1 kB | 41,347.0 kB | [文件列表] |
| s390x | 4.0-1 | 7,548.7 kB | 48,143.0 kB | [文件列表] |
| sparc64 （非官方移植版） | 4.0-1 | 8,190.5 kB | 89,680.0 kB | [文件列表] |
| x32 （非官方移植版） | 3.5.0.1+dfsg-1 | 5,788.7 kB | 33,442.0 kB | [文件列表] |