Paket: bali-phy (4.0-1 och andra)

[ Källkod: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Andra paket besläktade med bali-phy

• dep: libboost-chrono1.71.0 [x32]

  Paketet inte tillgängligt

• dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]

  C++ representation of time duration, time point, and clocks

• dep: libboost-chrono1.83.0t64 (>= 1.83.0) [ej ia64, x32]

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• dep: libboost-filesystem1.71.0 [x32]

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• dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [hppa, m68k]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-json1.83.0 (>= 1.83.0) [ej hppa, ia64, m68k, x32]

  C++ containers and algorithms that implement JSON

• dep: libboost-program-options1.71.0 [x32]

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• dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]

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• dep: libboost-program-options1.83.0 (>= 1.83.0) [ej ia64, x32]

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• dep: libboost-random1.71.0 [x32]

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• dep: libboost-random1.74.0 (>= 1.74.0) [ia64]

  Boost Random Number Library

• dep: libboost-random1.83.0 (>= 1.83.0) [ej ia64, x32]

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• dep: libc6 (>= 2.29) [x32]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.38) [ej alpha, ia64, loong64, x32]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libfmt10 (>= 10.1.1+ds1) [ej hppa, ia64, m68k, x32]

  fast type-safe C++ formatting library -- library

• dep: libgcc-s1 (>= 14.2.0-17) [loong64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.0) [s390x]

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, sparc64, x32]

  dep: libgcc-s1 (>= 4.2) [ia64, ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

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• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: libstdc++6 (>= 13.1) [m68k]

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  dep: libstdc++6 (>= 14) [ej alpha, ia64, m68k, x32]

  dep: libstdc++6 (>= 14.2.0-18) [alpha]

  dep: libstdc++6 (>= 9) [ia64, x32]

• dep: libunwind8 [ia64]

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• dep: perl

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• dep: python3

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• rec: gnuplot

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  också ett virtuellt paket som tillhandahålls av gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

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• sug: figtree

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• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

Hämta bali-phy

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	4.0-1	9.258,5 kbyte	53.434,0 kbyte	[filförteckning]
amd64	4.0-1	9.822,0 kbyte	52.710,0 kbyte	[filförteckning]
arm64	4.0-1	8.730,3 kbyte	47.950,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	3.6.1+dfsg-3	6.226,6 kbyte	37.832,0 kbyte	[filförteckning]
i386	4.0-1	9.253,0 kbyte	51.011,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	3.6.1+dfsg-1	9.006,8 kbyte	69.870,0 kbyte	[filförteckning]
loong64 (inofficiell anpassning)	4.0-1	9.159,7 kbyte	50.162,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	3.6.1+dfsg-3	5.450,2 kbyte	34.598,0 kbyte	[filförteckning]
mips64el	4.0-1	8.919,8 kbyte	58.594,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	4.0-1	9.151,4 kbyte	57.742,0 kbyte	[filförteckning]
ppc64el	4.0-1	9.592,2 kbyte	56.065,0 kbyte	[filförteckning]
riscv64	4.0-1	10.112,1 kbyte	41.347,0 kbyte	[filförteckning]
s390x	4.0-1	7.548,7 kbyte	48.143,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	4.0-1	8.190,5 kbyte	89.680,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	3.5.0.1+dfsg-1	5.788,7 kbyte	33.442,0 kbyte	[filförteckning]