Pakket: ggd-utils (1.0.0+ds-1 en anderen)

[ Bron: ggd-utils  ]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Andere aan ggd-utils gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, loong64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, sparc64]

• dep: libgo22 [alpha, ppc64, sparc64, x32]

  Runtime library for GNU Go applications

ggd-utils downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.0+ds-1+b9	190,5 kB	759,0 kB	[overzicht]
amd64	1.0.0+ds-1+b16	2.206,1 kB	6.605,0 kB	[overzicht]
arm64	1.0.0+ds-1+b16	1.895,3 kB	6.162,0 kB	[overzicht]
armel	1.0.0+ds-1+b16	1.964,1 kB	6.504,0 kB	[overzicht]
armhf	1.0.0+ds-1+b16	1.958,5 kB	6.504,0 kB	[overzicht]
i386	1.0.0+ds-1+b16	2.127,9 kB	6.428,0 kB	[overzicht]
loong64 (unofficial port)	1.0.0+ds-1+b5	1.790,6 kB	6.011,0 kB	[overzicht]
mips64el	1.0.0+ds-1+b16	1.791,9 kB	7.204,0 kB	[overzicht]
ppc64 (unofficial port)	1.0.0+ds-1+b9	219,6 kB	1.088,0 kB	[overzicht]
ppc64el	1.0.0+ds-1+b16	1.888,7 kB	6.417,0 kB	[overzicht]
riscv64	1.0.0+ds-1+b11	1.962,8 kB	6.225,0 kB	[overzicht]
s390x	1.0.0+ds-1+b16	2.005,8 kB	6.865,0 kB	[overzicht]
sparc64 (unofficial port)	1.0.0+ds-1+b8	187,8 kB	1.274,0 kB	[overzicht]
x32 (unofficial port)	1.0.0+ds-1+b9	199,3 kB	716,0 kB	[overzicht]