Pakket: ggd-utils (0.0.7+ds-3 en anderen)

[ Bron: ggd-utils  ]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Andere aan ggd-utils gerelateerde pakketten

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [niet arm64, i386, ppc64el]

ggd-utils downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.0.7+ds-3+b6	1.685,4 kB	5.273,0 kB	[overzicht]
arm64	0.0.7+ds-3+b6	1.441,3 kB	4.860,0 kB	[overzicht]
armel	0.0.7+ds-3+b6	1.470,3 kB	4.508,0 kB	[overzicht]
armhf	0.0.7+ds-3+b6	1.465,2 kB	4.444,0 kB	[overzicht]
i386	0.0.7+ds-3+b6	1.601,7 kB	4.482,0 kB	[overzicht]
mips64el	0.0.7+ds-3+b6	1.362,7 kB	5.335,0 kB	[overzicht]
mipsel	0.0.7+ds-3+b6	1.385,8 kB	4.987,0 kB	[overzicht]
ppc64el	0.0.7+ds-3+b6	1.415,6 kB	4.924,0 kB	[overzicht]
s390x	0.0.7+ds-3+b6	1.545,2 kB	5.183,0 kB	[overzicht]