Pakket: ggd-utils (1.0.0+ds-1 en anderen)

[ Bron: ggd-utils  ]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Andere aan ggd-utils gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

ggd-utils downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.0+ds-1+b6	1.775,3 kB	5.126,0 kB	[overzicht]
arm64	1.0.0+ds-1+b6	1.530,8 kB	4.842,0 kB	[overzicht]
armel	1.0.0+ds-1+b6	1.515,0 kB	4.907,0 kB	[overzicht]
armhf	1.0.0+ds-1+b6	1.507,8 kB	4.883,0 kB	[overzicht]
i386	1.0.0+ds-1+b6	1.651,4 kB	4.956,0 kB	[overzicht]
mips64el	1.0.0+ds-1+b6	1.379,6 kB	5.565,0 kB	[overzicht]
mipsel	1.0.0+ds-1+b6	1.412,2 kB	5.462,0 kB	[overzicht]
ppc64el	1.0.0+ds-1+b6	1.497,5 kB	4.905,0 kB	[overzicht]
s390x	1.0.0+ds-1+b6	1.619,4 kB	5.246,0 kB	[overzicht]