Package: ggd-utils (1.0.0+ds-1 and others)

[ Source: ggd-utils  ]

programs for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

Other Packages Related to ggd-utils

• dep: libc6 (>= 2.34) [not alpha, loong64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [alpha, sparc64]

• dep: libgo22 [alpha, ppc64, sparc64, x32]

  Runtime library for GNU Go applications

Download ggd-utils

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.0.0+ds-1+b9	190.5 kB	759.0 kB	[list of files]
amd64	1.0.0+ds-1+b16	2,206.1 kB	6,605.0 kB	[list of files]
arm64	1.0.0+ds-1+b16	1,895.3 kB	6,162.0 kB	[list of files]
armel	1.0.0+ds-1+b16	1,964.1 kB	6,504.0 kB	[list of files]
armhf	1.0.0+ds-1+b16	1,958.5 kB	6,504.0 kB	[list of files]
i386	1.0.0+ds-1+b16	2,127.9 kB	6,428.0 kB	[list of files]
loong64 (unofficial port)	1.0.0+ds-1+b5	1,790.6 kB	6,011.0 kB	[list of files]
mips64el	1.0.0+ds-1+b16	1,791.9 kB	7,204.0 kB	[list of files]
ppc64 (unofficial port)	1.0.0+ds-1+b9	219.6 kB	1,088.0 kB	[list of files]
ppc64el	1.0.0+ds-1+b16	1,888.7 kB	6,417.0 kB	[list of files]
riscv64	1.0.0+ds-1+b11	1,962.8 kB	6,225.0 kB	[list of files]
s390x	1.0.0+ds-1+b16	2,005.8 kB	6,865.0 kB	[list of files]
sparc64 (unofficial port)	1.0.0+ds-1+b8	187.8 kB	1,274.0 kB	[list of files]
x32 (unofficial port)	1.0.0+ds-1+b9	199.3 kB	716.0 kB	[list of files]