Package: bali-phy (4.0-1 and others)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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Download bali-phy

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.0-1	9,258.5 kB	53,434.0 kB	[list of files]
amd64	4.0-1	9,822.0 kB	52,710.0 kB	[list of files]
arm64	4.0-1	8,730.3 kB	47,950.0 kB	[list of files]
hppa (unofficial port)	3.6.1+dfsg-3	6,226.6 kB	37,832.0 kB	[list of files]
i386	4.0-1	9,253.0 kB	51,011.0 kB	[list of files]
ia64 (unofficial port)	3.6.1+dfsg-1	9,006.8 kB	69,870.0 kB	[list of files]
loong64 (unofficial port)	4.0-1	9,159.7 kB	50,162.0 kB	[list of files]
m68k (unofficial port)	3.6.1+dfsg-3	5,450.2 kB	34,598.0 kB	[list of files]
mips64el	4.0-1	8,919.8 kB	58,594.0 kB	[list of files]
ppc64 (unofficial port)	4.0-1	9,151.4 kB	57,742.0 kB	[list of files]
ppc64el	4.0-1	9,592.2 kB	56,065.0 kB	[list of files]
riscv64	4.0-1	10,112.1 kB	41,347.0 kB	[list of files]
s390x	4.0-1	7,548.7 kB	48,143.0 kB	[list of files]
sparc64 (unofficial port)	4.0-1	8,190.5 kB	89,680.0 kB	[list of files]
x32 (unofficial port)	3.5.0.1+dfsg-1	5,788.7 kB	33,442.0 kB	[list of files]