Package: bali-phy (4.0~beta16+dfsg-1 and others)

[ Source: bali-phy  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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Download bali-phy

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	4.0~beta16+dfsg-1	9,700.1 kB	52,351.0 kB	[list of files]
arm64	4.0~beta16+dfsg-1	8,619.4 kB	47,527.0 kB	[list of files]
armhf	4.0~beta2+dfsg-1	5,779.1 kB	26,400.0 kB	[list of files]
i386	4.0~beta16+dfsg-1	9,147.2 kB	50,652.0 kB	[list of files]
ia64 (unofficial port)	4.0~beta2+dfsg-1	11,619.3 kB	82,739.0 kB	[list of files]
m68k (unofficial port)	4.0~beta16+dfsg-1	7,741.1 kB	44,869.0 kB	[list of files]
mips64el	4.0~beta16+dfsg-1	8,687.3 kB	57,950.0 kB	[list of files]
ppc64el	4.0~beta16+dfsg-1	9,475.9 kB	55,642.0 kB	[list of files]
riscv64	4.0~beta16+dfsg-1	10,037.2 kB	41,016.0 kB	[list of files]
s390x	4.0~beta16+dfsg-1	7,449.4 kB	47,780.0 kB	[list of files]