Package: samtools (1.20-3 and others)

Links for samtools

Debian Resources:

Download Source Package samtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.htslib.org]

Similar packages:

elaborazioni di allineamenti di sequenze nei formati SAM, BAM e CRAM

Samtools è un insieme di utilità che manipolano allineamenti di sequenze di nucleotidi nel formato binario BAM. Importa ed esporta nei formati SAM (Sequence Alignment/Map - allineamento/mappa di sequenze) e CRAM ASCII, effettua ordinamenti, unioni e indicizzazioni e permette di rintracciare letture in qualsiasi regione in modo veloce. È stato progettato per funzionare su flussi di dati ed è in grado di aprire un file BAM o CRAM (non SAM) su un server FTP o HTTP remoto.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

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dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

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also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

Libreria C GNU: librerie condivise
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libhts3t64 (>= 1.17) [ia64]

libreria C per formati di dati di sequenziamento ad alte prestazioni

dep: libhts3t64 (>= 1.20~) [not ia64]
dep: libncurses6 (>= 6)

librerie condivise per la gestione del terminale
dep: libtinfo6 (>= 6)

libreria condivisa di basso livello terminfo per la gestione del terminale
dep: zlib1g (>= 1:1.1.4) [not armel, armhf, hppa, i386, m68k, sh4]

libreria di compressione - runtime

dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, i386, m68k, sh4]

sug: cwltool

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Download samtools

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.20-3	633.1 kB	1,804.0 kB	[list of files]
amd64	1.20-3	637.6 kB	1,409.0 kB	[list of files]
arm64	1.20-3+b1	613.9 kB	1,674.0 kB	[list of files]
armel	1.20-3	601.7 kB	1,330.0 kB	[list of files]
armhf	1.20-3	605.0 kB	1,146.0 kB	[list of files]
hppa (unofficial port)	1.20-3	634.3 kB	1,371.0 kB	[list of files]
i386	1.20-3	672.3 kB	1,538.0 kB	[list of files]
ia64 (unofficial port)	1.19.2-1+b1	716.1 kB	2,112.0 kB	[list of files]
m68k (unofficial port)	1.20-3	612.5 kB	1,354.0 kB	[list of files]
mips64el	1.20-3	615.2 kB	1,824.0 kB	[list of files]
ppc64 (unofficial port)	1.20-3	652.6 kB	1,929.0 kB	[list of files]
ppc64el	1.20-3	662.7 kB	1,929.0 kB	[list of files]
riscv64	1.20-3	647.5 kB	1,281.0 kB	[list of files]
s390x	1.20-3	643.8 kB	1,485.0 kB	[list of files]
sh4 (unofficial port)	1.20-3	694.6 kB	1,668.0 kB	[list of files]
sparc64 (unofficial port)	1.20-3	601.8 kB	7,765.0 kB	[list of files]
x32 (unofficial port)	1.20-3	641.9 kB	1,378.0 kB	[list of files]