Package: samtools (1.21-1 and others)

[ Source: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libhts3t64 (>= 1.17) [ia64]

  C library for high-throughput sequencing data formats

  dep: libhts3t64 (>= 1.21) [not ia64]

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [not alpha, armel, armhf, hppa, i386, m68k, sh4]

  tömörítő könyvtár - futásidejű

  dep: zlib1g (>= 1:1.2.3.3) [alpha, armel, armhf, hppa, i386, m68k, sh4]

• sug: cwltool

  Common Workflow Language reference implementation

Download samtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.21-1	645.2 kB	1,874.0 kB	[list of files]
amd64	1.21-1	651.5 kB	1,447.0 kB	[list of files]
arm64	1.21-1	622.5 kB	1,679.0 kB	[list of files]
armel	1.21-1	614.7 kB	1,672.0 kB	[list of files]
armhf	1.21-1	617.9 kB	1,544.0 kB	[list of files]
hppa (unofficial port)	1.21-1	647.1 kB	1,387.0 kB	[list of files]
i386	1.21-1	683.3 kB	1,572.0 kB	[list of files]
ia64 (unofficial port)	1.19.2-1+b1	716.1 kB	2,112.0 kB	[list of files]
m68k (unofficial port)	1.21-1	619.4 kB	1,368.0 kB	[list of files]
mips64el	1.21-1	630.8 kB	1,894.0 kB	[list of files]
ppc64 (unofficial port)	1.21-1	665.4 kB	1,935.0 kB	[list of files]
ppc64el	1.21-1	677.4 kB	1,935.0 kB	[list of files]
riscv64	1.21-1	657.6 kB	1,299.0 kB	[list of files]
s390x	1.21-1	655.9 kB	1,507.0 kB	[list of files]
sh4 (unofficial port)	1.21-1	708.9 kB	1,674.0 kB	[list of files]
sparc64 (unofficial port)	1.21-1	614.2 kB	7,771.0 kB	[list of files]
x32 (unofficial port)	1.21-1	655.3 kB	1,416.0 kB	[list of files]