Package: tabix (1.20+ds-2 and others)

Links for tabix

Debian Resources:

Download Source Package htslib:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Michael R. Crusoe (QA Page)
Steffen Moeller (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [github.com]

Similar packages:

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.40) [sh4]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libdeflate0 (>= 1.0)

fast, whole-buffer DEFLATE-based compression and decompression
dep: libhtscodecs2 (>= 1.3.0)

Custom compression for CRAM and others
dep: liblzma5 (>= 5.1.1alpha+20120614)

XZ-format compression library
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

Download tabix

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.20+ds-2	479.1 kB	2,700.0 kB	[list of files]
amd64	1.20+ds-2	474.4 kB	2,293.0 kB	[list of files]
arm64	1.20+ds-2	444.0 kB	2,249.0 kB	[list of files]
armel	1.20+ds-2	405.0 kB	2,058.0 kB	[list of files]
armhf	1.20+ds-2	408.2 kB	1,498.0 kB	[list of files]
hppa (unofficial port)	1.20+ds-2	460.7 kB	2,270.0 kB	[list of files]
i386	1.20+ds-2	523.2 kB	2,610.0 kB	[list of files]
ia64 (unofficial port)	1.19+ds-1.1+b1	558.6 kB	4,599.0 kB	[list of files]
m68k (unofficial port)	1.20+ds-2	427.6 kB	2,062.0 kB	[list of files]
mips64el	1.20+ds-2	434.1 kB	2,617.0 kB	[list of files]
ppc64 (unofficial port)	1.20+ds-2	494.0 kB	3,145.0 kB	[list of files]
ppc64el	1.20+ds-2	511.2 kB	3,017.0 kB	[list of files]
riscv64	1.20+ds-2	491.8 kB	1,901.0 kB	[list of files]
s390x	1.20+ds-2	467.1 kB	2,477.0 kB	[list of files]
sh4 (unofficial port)	1.20+ds-2	493.4 kB	1,993.0 kB	[list of files]
sparc64 (unofficial port)	1.20+ds-2	401.4 kB	3,160.0 kB	[list of files]
x32 (unofficial port)	1.20+ds-2	475.4 kB	2,238.0 kB	[list of files]