Package: srst2 (0.2.0-13 and others)

[ Source: srst2  ]

Kort læsesekvensindtastning for bakterielle patogener

Dette program er designet til at bruge Illumina-sekvensdata, en MLST-database og/eller en database med gensekvenser (f.eks. resistente gener, virulensgener etc.) og rapportere tilstedeværelsen af ST'er og/eller referencegener.

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• dep: cd-hit

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• dep: python [hppa, x32]

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• dep: python-biopython [hppa, x32]

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• dep: python-scipy [hppa, x32]

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• dep: python3 [not hppa, x32]

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• dep: python3-biopython [not hppa, x32]

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• dep: samtools

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• rec: python3-rpy2

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Download srst2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.2.0-13	59.8 kB	265.0 kB	[list of files]
amd64	0.2.0-13	59.9 kB	265.0 kB	[list of files]
arm64	0.2.0-13	59.9 kB	265.0 kB	[list of files]
hppa (unofficial port)	0.1.8-1	58.6 kB	258.0 kB	[list of files]
ia64 (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
loong64 (unofficial port)	0.2.0-13	59.9 kB	265.0 kB	[list of files]
m68k (unofficial port)	0.2.0-13	59.9 kB	265.0 kB	[list of files]
mips64el	0.2.0-13	59.9 kB	265.0 kB	[list of files]
ppc64 (unofficial port)	0.2.0-13	59.8 kB	265.0 kB	[list of files]
ppc64el	0.2.0-13	59.9 kB	265.0 kB	[list of files]
riscv64	0.2.0-13	59.9 kB	265.0 kB	[list of files]
sh4 (unofficial port)	0.2.0-13	59.8 kB	265.0 kB	[list of files]
sparc64 (unofficial port)	0.2.0-13	59.9 kB	265.0 kB	[list of files]
x32 (unofficial port)	0.1.8-1	58.6 kB	258.0 kB	[list of files]