Pakket: srst2 (0.2.0-13 en anderen)

[ Bron: srst2  ]

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Andere aan srst2 gerelateerde pakketten

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: python [hppa, x32]

  Pakket niet beschikbaar

• dep: python-biopython [hppa, x32]

  Python library for bioinformatics (implemented in Python 2)

• dep: python-scipy [hppa, x32]

  Pakket niet beschikbaar

• dep: python3 [niet hppa, x32]

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython [niet hppa, x32]

  Python3 library for bioinformatics

• dep: python3-scipy [niet hppa, x32]

  scientific tools for Python 3

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

srst2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.2.0-13	59,8 kB	265,0 kB	[overzicht]
amd64	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
arm64	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
hppa (unofficial port)	0.1.8-1	58,6 kB	258,0 kB	[overzicht]
ia64 (unofficial port)	0.2.0-11	59,6 kB	254,0 kB	[overzicht]
m68k (unofficial port)	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
mips64el	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
ppc64 (unofficial port)	0.2.0-13	59,8 kB	265,0 kB	[overzicht]
ppc64el	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
riscv64	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
sh4 (unofficial port)	0.2.0-13	59,8 kB	265,0 kB	[overzicht]
sparc64 (unofficial port)	0.2.0-13	59,9 kB	265,0 kB	[overzicht]
x32 (unofficial port)	0.1.8-1	58,6 kB	258,0 kB	[overzicht]