套件：bali-phy（3.6.1+dfsg-3）

[ 原始碼： bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

其他與 bali-phy 有關的套件

• dep: libboost-chrono1.83.0t64 (>= 1.83.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libboost-random1.83.0 (>= 1.83.0)

  Boost Random Number Library

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [ppc64el, s390x]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

下載 bali-phy

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	6，676。8 kB	39，067。0 kB	[檔案列表]
arm64	6，024。2 kB	36，555。0 kB	[檔案列表]
armel	5，076。0 kB	32，497。0 kB	[檔案列表]
armhf	4，629。1 kB	23，653。0 kB	[檔案列表]
i386	6，350。6 kB	37，805。0 kB	[檔案列表]
mips64el	5，923。0 kB	44，997。0 kB	[檔案列表]
ppc64el	6，422。8 kB	42，177。0 kB	[檔案列表]
riscv64	6，670。8 kB	31，791。0 kB	[檔案列表]
s390x	5，229。2 kB	36，851。0 kB	[檔案列表]