软件包：bali-phy（3.6.1+dfsg-1）

[ 源代码： bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

其他与 bali-phy 有关的软件包

• dep: libboost-chrono1.74.0 (>= 1.74.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libboost-random1.74.0 (>= 1.74.0)

  Boost Random Number Library

• dep: libc6 (>= 2.29)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [s390x]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 9)

  GNU 标准 C++ 库，第3版

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  同时作为一个虚包由这些包填实： gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

下载 bali-phy

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	6,064.3 kB	35,817.0 kB	[文件列表]
arm64	5,434.7 kB	32,461.0 kB	[文件列表]
armel	4,569.9 kB	29,779.0 kB	[文件列表]
armhf	4,270.2 kB	22,071.0 kB	[文件列表]
i386	5,850.5 kB	35,191.0 kB	[文件列表]
mips64el	5,622.3 kB	42,347.0 kB	[文件列表]
mipsel	5,563.3 kB	40,550.0 kB	[文件列表]
ppc64el	6,142.8 kB	40,895.0 kB	[文件列表]
s390x	4,982.7 kB	35,461.0 kB	[文件列表]