Package: gmap (2024-11-20+ds-2)

[ Source: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	5,233.2 kB	44,708.0 kB	[list of files]
amd64	33,685.8 kB	268,823.0 kB	[list of files]
arm64	6,907.0 kB	61,267.0 kB	[list of files]
armel	4,919.1 kB	46,844.0 kB	[list of files]
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mips64el	5,960.0 kB	57,817.0 kB	[list of files]
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x32 (unofficial port)	5,639.4 kB	48,080.0 kB	[list of files]