Package: gmap (2024-11-20+ds-1)

[ Source: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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Download gmap

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	5,237.3 kB	44,707.0 kB	[list of files]
amd64	33,744.7 kB	268,822.0 kB	[list of files]
arm64	6,859.2 kB	61,266.0 kB	[list of files]
armel	4,930.9 kB	46,231.0 kB	[list of files]
armhf	4,950.9 kB	44,107.0 kB	[list of files]
i386	5,170.3 kB	46,587.0 kB	[list of files]
mips64el	5,924.4 kB	57,816.0 kB	[list of files]
ppc64el	7,139.9 kB	63,634.0 kB	[list of files]
riscv64	6,368.6 kB	59,310.0 kB	[list of files]
sh4 (unofficial port)	5,781.5 kB	48,641.0 kB	[list of files]
x32 (unofficial port)	5,523.9 kB	48,079.0 kB	[list of files]