[ 原始碼: ggd-utils ]
套件:ggd-utils(1.0.0+ds-1 以及其他的)
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:
* a .tbi is present * the VCF has ""##fileformat=VCF" as the first line * the VCF has a #CHROM header * the chromosome are in the order specified by the genome file (and present) * the positions are sorted * the positions are <= the chromosome lengths defined in the genome file.
As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes
下載 ggd-utils
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|---|
amd64 | 1.0.0+ds-1+b9 | 1,842。4 kB | 5,300。0 kB | [檔案列表] |
arm64 | 1.0.0+ds-1+b9 | 1,592。7 kB | 5,036。0 kB | [檔案列表] |
armel | 1.0.0+ds-1+b9 | 1,574。9 kB | 5,179。0 kB | [檔案列表] |
armhf | 1.0.0+ds-1+b9 | 1,568。2 kB | 5,155。0 kB | [檔案列表] |
i386 | 1.0.0+ds-1+b9 | 1,700。6 kB | 5,195。0 kB | [檔案列表] |
mips64el | 1.0.0+ds-1+b9 | 1,439。4 kB | 5,823。0 kB | [檔案列表] |
ppc64el | 1.0.0+ds-1+b9 | 1,584。2 kB | 5,163。0 kB | [檔案列表] |
riscv64 | 1.0.0+ds-1+b4 | 1,587。9 kB | 5,084。0 kB | [檔案列表] |
s390x | 1.0.0+ds-1+b9 | 1,685。1 kB | 5,556。0 kB | [檔案列表] |