[ 原始碼: ggd-utils ]
套件:ggd-utils(1.0.0+ds-1 以及其他的)
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:
* a .tbi is present * the VCF has ""##fileformat=VCF" as the first line * the VCF has a #CHROM header * the chromosome are in the order specified by the genome file (and present) * the positions are sorted * the positions are <= the chromosome lengths defined in the genome file.
As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes
下載 ggd-utils
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|---|
amd64 | 1.0.0+ds-1+b6 | 1,775。3 kB | 5,126。0 kB | [檔案列表] |
arm64 | 1.0.0+ds-1+b6 | 1,530。8 kB | 4,842。0 kB | [檔案列表] |
armel | 1.0.0+ds-1+b6 | 1,515。0 kB | 4,907。0 kB | [檔案列表] |
armhf | 1.0.0+ds-1+b6 | 1,507。8 kB | 4,883。0 kB | [檔案列表] |
i386 | 1.0.0+ds-1+b6 | 1,651。4 kB | 4,956。0 kB | [檔案列表] |
mips64el | 1.0.0+ds-1+b6 | 1,379。6 kB | 5,565。0 kB | [檔案列表] |
mipsel | 1.0.0+ds-1+b6 | 1,412。2 kB | 5,462。0 kB | [檔案列表] |
ppc64el | 1.0.0+ds-1+b6 | 1,497。5 kB | 4,905。0 kB | [檔案列表] |
s390x | 1.0.0+ds-1+b6 | 1,619。4 kB | 5,246。0 kB | [檔案列表] |