Paket: seqan-raptor (3.0.1+ds-9 ve diğerleri)

[ Kaynak: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

seqan-raptor ile İlgili Diğer Paketler

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34) [alpha, ia64, loong64 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, loong64, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, mips64el, ppc64, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 12) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [ppc64, sparc64]

  dep: libstdc++6 (>= 14) [ia64, ppc64, sparc64 değil]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libxxhash0 (>= 0.6.5) [sparc64]

  shared library for xxhash

• dep: libyaml-cpp0.7 (>= 0.7.0) [sparc64]

  YAML parser and emitter for C++

• dep: libyaml-cpp0.8 (>= 0.7.0) [ia64, ppc64, sparc64 değil]

  YAML parser and emitter for C++

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: cwl-runner

  sanal paketi sağlayan cwltool, toil

seqan-raptor indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	3.0.1+ds-9	590,3 kB	2.427,0 kB	[dosya listesi]
amd64	3.0.1+ds-9	679,0 kB	2.216,0 kB	[dosya listesi]
arm64	3.0.1+ds-9	576,8 kB	2.040,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	2.0.0.0.git.fecfbca+ds-3	695,6 kB	4.733,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	3.0.1+ds-9	621,1 kB	2.040,0 kB	[dosya listesi]
mips64el	3.0.1+ds-9	550,2 kB	2.448,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	3.0.0+ds-2	458,7 kB	1.831,0 kB	[dosya listesi]
ppc64el	3.0.1+ds-9	656,0 kB	2.424,0 kB	[dosya listesi]
riscv64	3.0.1+ds-9	653,2 kB	1.616,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	3.0.1+ds-2	473,3 kB	2.111,0 kB	[dosya listesi]