Pakket: seqan-raptor (3.0.1+ds-9 en anderen)

[ Bron: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

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  dep: libc6 (>= 2.40) [loong64]

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• dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, loong64, ppc64el]

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  dep: libgcc-s1 (>= 3.4) [alpha, mips64el, ppc64, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

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seqan-raptor downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	3.0.1+ds-9	590,3 kB	2.427,0 kB	[overzicht]
amd64	3.0.1+ds-9	679,0 kB	2.216,0 kB	[overzicht]
arm64	3.0.1+ds-9	576,8 kB	2.040,0 kB	[overzicht]
ia64 (unofficial port)	2.0.0.0.git.fecfbca+ds-3	695,6 kB	4.733,0 kB	[overzicht]
loong64 (unofficial port)	3.0.1+ds-9	621,1 kB	2.040,0 kB	[overzicht]
mips64el	3.0.1+ds-9	550,2 kB	2.448,0 kB	[overzicht]
ppc64 (unofficial port)	3.0.0+ds-2	458,7 kB	1.831,0 kB	[overzicht]
ppc64el	3.0.1+ds-9	656,0 kB	2.424,0 kB	[overzicht]
riscv64	3.0.1+ds-9	653,2 kB	1.616,0 kB	[overzicht]
sparc64 (unofficial port)	3.0.1+ds-2	473,3 kB	2.111,0 kB	[overzicht]