Pakket: seqan-raptor (3.0.1+ds-5 en anderen)

[ Bron: seqan-raptor  ]

pre-filter for querying very large collections of nucleotide sequences

Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.

Andere aan seqan-raptor gerelateerde pakketten

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34) [niet alpha, ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.3.1) [arm64, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [niet arm64, ia64, ppc64el, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 12) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet arm64, ia64]

  dep: libstdc++6 (>= 14) [arm64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libxxhash0 (>= 0.6.5) [sparc64]

  shared library for xxhash

• dep: libyaml-cpp0.7 (>= 0.7.0) [sparc64]

  YAML parser and emitter for C++

• dep: libyaml-cpp0.8 (>= 0.7.0) [niet ia64, ppc64, sparc64]

  YAML parser and emitter for C++

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• sug: cwl-runner

  virtueel pakket geboden door cwltool, toil

seqan-raptor downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	3.0.1+ds-5	579,4 kB	2.362,0 kB	[overzicht]
amd64	3.0.1+ds-5	646,1 kB	2.087,0 kB	[overzicht]
arm64	3.0.1+ds-5+b1	575,5 kB	1.976,0 kB	[overzicht]
ia64 (unofficial port)	2.0.0.0.git.fecfbca+ds-3	695,6 kB	4.733,0 kB	[overzicht]
mips64el	3.0.1+ds-5	529,1 kB	2.319,0 kB	[overzicht]
ppc64 (unofficial port)	3.0.0+ds-2	458,7 kB	1.831,0 kB	[overzicht]
ppc64el	3.0.1+ds-5	633,6 kB	2.359,0 kB	[overzicht]
riscv64	3.0.1+ds-5+b1	620,9 kB	1.560,0 kB	[overzicht]
sparc64 (unofficial port)	3.0.1+ds-2	473,3 kB	2.111,0 kB	[overzicht]