Pakket: maq (0.7.1-10 en anderen)

[ Bron: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Andere aan maq gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, ia64, loong64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.39) [loong64, sh4]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, i386, ia64, loong64, mips64el, ppc64, ppc64el, riscv64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

maq downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.7.1-10	297,2 kB	582,0 kB	[overzicht]
amd64	0.7.1-10	295,1 kB	545,0 kB	[overzicht]
arm64	0.7.1-10	287,3 kB	581,0 kB	[overzicht]
armel	0.7.1-10	284,3 kB	524,0 kB	[overzicht]
armhf	0.7.1-10	286,4 kB	472,0 kB	[overzicht]
hppa (unofficial port)	0.7.1-10	304,9 kB	553,0 kB	[overzicht]
i386	0.7.1-10	305,4 kB	581,0 kB	[overzicht]
ia64 (unofficial port)	0.7.1-9	329,5 kB	752,0 kB	[overzicht]
loong64 (unofficial port)	0.7.1-10	291,9 kB	533,0 kB	[overzicht]
m68k (unofficial port)	0.7.1-10	295,5 kB	556,0 kB	[overzicht]
mips64el	0.7.1-10	296,6 kB	588,0 kB	[overzicht]
ppc64 (unofficial port)	0.7.1-10	300,7 kB	645,0 kB	[overzicht]
ppc64el	0.7.1-10	303,5 kB	645,0 kB	[overzicht]
riscv64	0.7.1-10	296,8 kB	493,0 kB	[overzicht]
s390x	0.7.1-10	299,0 kB	557,0 kB	[overzicht]
sh4 (unofficial port)	0.7.1-10	316,1 kB	581,0 kB	[overzicht]
sparc64 (unofficial port)	0.7.1-10	290,1 kB	1.352,0 kB	[overzicht]
x32 (unofficial port)	0.7.1-10	296,3 kB	545,0 kB	[overzicht]