Package: maq (0.7.1-10 and others)

[ Source: maq  ]

kortlægger korte, fast-længde, polymorfiske DNA-sekvenslæsninger til reference-sekvenser

Maq (forkortelse af »Mapping and Assembly with Quality«) bygger kortlagte montager fra korte læsninger genereret af næste generation inden for maskiner til sekvensering. Det blev særligt designet til »Illumina-Solexa 1G Genetic Analyzer«, og har indledende funktionalitet til at håndtere ABI SOLid-data. Maq var tidligere kendt som mapass2.

Udvikling af Maq stoppede i 2008. Dets efterfølger er BWA og SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to maq

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  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.31) [ia64]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, i386, ia64, mips64el, ppc64, ppc64el, riscv64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

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• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: libstdc++6 (>= 5)

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• dep: zlib1g (>= 1:1.2.3.3)

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• sug: bwa

  Burrows-Wheeler Aligner (sekvenssammenligner)

• sug: samtools

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Download maq

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.7.1-10	297.2 kB	582.0 kB	[list of files]
amd64	0.7.1-10	295.1 kB	545.0 kB	[list of files]
arm64	0.7.1-10	287.3 kB	581.0 kB	[list of files]
armel	0.7.1-10	284.3 kB	524.0 kB	[list of files]
armhf	0.7.1-10	286.4 kB	472.0 kB	[list of files]
hppa (unofficial port)	0.7.1-10	304.9 kB	553.0 kB	[list of files]
i386	0.7.1-10	305.4 kB	581.0 kB	[list of files]
ia64 (unofficial port)	0.7.1-9	329.5 kB	752.0 kB	[list of files]
m68k (unofficial port)	0.7.1-10	295.5 kB	556.0 kB	[list of files]
mips64el	0.7.1-10	296.6 kB	588.0 kB	[list of files]
ppc64 (unofficial port)	0.7.1-10	300.7 kB	645.0 kB	[list of files]
ppc64el	0.7.1-10	303.5 kB	645.0 kB	[list of files]
riscv64	0.7.1-10	296.8 kB	493.0 kB	[list of files]
s390x	0.7.1-10	299.0 kB	557.0 kB	[list of files]
sh4 (unofficial port)	0.7.1-10	316.1 kB	581.0 kB	[list of files]
sparc64 (unofficial port)	0.7.1-10	290.1 kB	1,352.0 kB	[list of files]
x32 (unofficial port)	0.7.1-10	296.3 kB	545.0 kB	[list of files]