Pakket: maq (0.7.1-9)

[ Bron: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Andere aan maq gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [niet amd64, armel, armhf, s390x]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

maq downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	295,7 kB	543,0 kB	[overzicht]
arm64	286,7 kB	519,0 kB	[overzicht]
armel	285,5 kB	530,0 kB	[overzicht]
armhf	286,9 kB	474,0 kB	[overzicht]
i386	306,2 kB	575,0 kB	[overzicht]
mips64el	296,9 kB	578,0 kB	[overzicht]
mipsel	303,5 kB	577,0 kB	[overzicht]
ppc64el	304,8 kB	647,0 kB	[overzicht]
s390x	288,4 kB	547,0 kB	[overzicht]