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[ Source: maq  ]

Package: maq (0.7.1-10 and others)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Need an extra tag, Analysing, use::comparing, use::searching, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download maq

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.7.1-10 297.2 kB582.0 kB [list of files]
amd64 0.7.1-10 295.1 kB545.0 kB [list of files]
arm64 0.7.1-10 287.3 kB581.0 kB [list of files]
armel 0.7.1-10 284.3 kB524.0 kB [list of files]
armhf 0.7.1-10 286.4 kB472.0 kB [list of files]
hppa (unofficial port) 0.7.1-10 304.9 kB553.0 kB [list of files]
i386 0.7.1-10 305.4 kB581.0 kB [list of files]
ia64 (unofficial port) 0.7.1-9 329.5 kB752.0 kB [list of files]
m68k (unofficial port) 0.7.1-10 295.5 kB556.0 kB [list of files]
mips64el 0.7.1-10 296.6 kB588.0 kB [list of files]
ppc64 (unofficial port) 0.7.1-10 300.7 kB645.0 kB [list of files]
ppc64el 0.7.1-10 303.5 kB645.0 kB [list of files]
riscv64 0.7.1-10 296.8 kB493.0 kB [list of files]
s390x 0.7.1-10 299.0 kB557.0 kB [list of files]
sh4 (unofficial port) 0.7.1-10 316.1 kB581.0 kB [list of files]
sparc64 (unofficial port) 0.7.1-10 290.1 kB1,352.0 kB [list of files]
x32 (unofficial port) 0.7.1-10 296.3 kB545.0 kB [list of files]