Package: kissplice (2.6.7-1 and others)

[ Source: kissplice  ]

Detektion af diverse slags polymorfismer i RNA-sekvensdata

KisSplice er et program, som gør det muligt at analysere RNA-sekvensdata med eller uden en referencearvemasse. Det er en præcis lokal transcriptome assembler hvor du kan identificere SNP'er, indels og alternative splicing-hændelser. Programmet kan håndtere et arbitrært antal biologiske betingelser og vil kvantificere hver variant i hver betingelse. Programmet er blevet testet på Illumina-datasæt på op til 1G-læsninger. Dets hukommelsesforbrug er omkring 5 Gb for 100 millioner læsninger.

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Download kissplice

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.2.1-1	596.7 kB	1,376.0 kB	[list of files]
amd64	2.6.7-1	485.0 kB	1,178.0 kB	[list of files]
arm64	2.6.7-1	469.8 kB	1,370.0 kB	[list of files]
hppa (unofficial port)	2.1.0-1	1,289.9 kB	2,181.0 kB	[list of files]
ia64 (unofficial port)	2.6.2-3	506.4 kB	1,581.0 kB	[list of files]
m68k (unofficial port)	2.2.1-1	555.8 kB	1,120.0 kB	[list of files]
mips64el	2.6.7-1	486.1 kB	1,466.0 kB	[list of files]
ppc64 (unofficial port)	2.6.7-1	485.5 kB	1,434.0 kB	[list of files]
ppc64el	2.6.7-1	486.5 kB	1,434.0 kB	[list of files]
riscv64	2.6.7-1	480.3 kB	1,002.0 kB	[list of files]
sh4 (unofficial port)	2.1.0-1	1,282.1 kB	2,090.0 kB	[list of files]
sparc64 (unofficial port)	2.6.7-1	460.2 kB	7,783.0 kB	[list of files]
x32 (unofficial port)	2.5.3-1	4,035.5 kB	15,302.0 kB	[list of files]