软件包：centrifuge（1.0.4.2-1 以及其他的）

[ 源代码： centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

其他与 centrifuge 有关的软件包

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.34) [hppa]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.38) [除 hppa, ia64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libstdc++6 (>= 11) [hppa]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 13.1) [除 hppa]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

下载 centrifuge

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.0.4.2-1	568.7 kB	1,781.0 kB	[文件列表]
arm64	1.0.4.2-1	520.8 kB	1,671.0 kB	[文件列表]
hppa （非官方移植版）	1.0.3-11	597.6 kB	1,679.0 kB	[文件列表]
ia64 （非官方移植版）	1.0.3-12	779.7 kB	3,011.0 kB	[文件列表]
mips64el	1.0.4.2-1	539.0 kB	1,903.0 kB	[文件列表]
ppc64el	1.0.4.2-1	578.0 kB	1,864.0 kB	[文件列表]
riscv64	1.0.4.2-1	589.5 kB	1,415.0 kB	[文件列表]