套件：centrifuge（1.0.4.2-1 以及其他的）

[ 原始碼： centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

其他與 centrifuge 有關的套件

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.34) [hppa]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.38) [除 hppa, ia64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支援函式庫

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [除 hppa]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

下載 centrifuge

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1.0.4.2-1	568。7 kB	1，781。0 kB	[檔案列表]
arm64	1.0.4.2-1	520。8 kB	1，671。0 kB	[檔案列表]
hppa （非官方移植版）	1.0.3-11	597。6 kB	1，679。0 kB	[檔案列表]
ia64 （非官方移植版）	1.0.3-12	779。7 kB	3，011。0 kB	[檔案列表]
mips64el	1.0.4.2-1	539。0 kB	1，903。0 kB	[檔案列表]
ppc64el	1.0.4.2-1	578。0 kB	1，864。0 kB	[檔案列表]
riscv64	1.0.4.2-1	589。5 kB	1，415。0 kB	[檔案列表]