[ 源代码： jellyfish ]
软件包：jellyfish（2.3.1-4 以及其他的）
jellyfish 的相关链接
Debian 的资源：
下载源码包 jellyfish：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Shaun Jackman (QA 页面)
- Andreas Tille (QA 页面)
- Michael R. Crusoe (QA 页面)
- Étienne Mollier (QA 页面)
外部的资源：
- 主页 [www.genome.umd.edu]
相似软件包：
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
其他与 jellyfish 有关的软件包
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- dep: libc6 (>= 2.34) [hppa]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.38) [除 hppa, ia64]
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- dep: libc6.1 (>= 2.31) [ia64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, riscv64]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支持库
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- dep: libhts3 (>= 1.10) [ia64]
- C library for high-throughput sequencing data formats
- dep: libhts3 (>= 1.17) [hppa]
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- dep: libhts3t64 (>= 1.17) [除 hppa, ia64]
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-12) [ia64]
- count k-mers in DNA sequences (dynamic library of jellyfish)
- dep: libjellyfish-2.0-2 (= 2.3.1-2+b1) [hppa]
- dep: libjellyfish-2.0-2 (= 2.3.1-4+b1) [除 hppa, ia64]
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- dep: libstdc++6 (>= 13.1) [hppa]
- GNU 标准 C++ 库，第3版
- dep: libstdc++6 (>= 14) [除 hppa, ia64]
- dep: libstdc++6 (>= 9) [ia64]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
下载 jellyfish
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| amd64 | 2.3.1-4+b1 | 788.6 kB | 2,527.0 kB | [文件列表] |
| arm64 | 2.3.1-4+b1 | 709.1 kB | 2,511.0 kB | [文件列表] |
| hppa （非官方移植版） | 2.3.1-2+b1 | 682.7 kB | 2,079.0 kB | [文件列表] |
| ia64 （非官方移植版） | 2.3.0-12 | 847.7 kB | 5,022.0 kB | [文件列表] |
| mips64el | 2.3.1-4+b1 | 665.5 kB | 3,082.0 kB | [文件列表] |
| ppc64el | 2.3.1-4+b1 | 746.0 kB | 2,895.0 kB | [文件列表] |
| riscv64 | 2.3.1-4+b1 | 755.3 kB | 1,963.0 kB | [文件列表] |