软件包：hisat2（2.2.1-5 以及其他的）

[ 源代码： hisat2  ]

graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

其他与 hisat2 有关的软件包

• dep: libc6 (>= 2.29) [x32]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.38) [除 alpha, ia64, x32]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC 支持库

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC 支持库

• dep: libstdc++6 (>= 13.1) [除 x32]

  GNU 标准 C++ 库，第3版

  dep: libstdc++6 (>= 9) [x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl

  拉里 沃尔的实用报表提取语言(Perl)

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• rec: bcftools

  genomic variant calling and manipulation of VCF/BCF files

• rec: python3-hisat2

  Python scripts accompanying hisat2

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

下载 hisat2

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	2.2.1-5	3,723.9 kB	14,324.0 kB	[文件列表]
amd64	2.2.1-5+b1	3,716.7 kB	14,675.0 kB	[文件列表]
arm64	2.2.1-5+b2	3,493.3 kB	13,419.0 kB	[文件列表]
armel	2.2.1-5+b1	3,465.4 kB	13,653.0 kB	[文件列表]
armhf	2.2.1-5+b1	3,412.6 kB	12,055.0 kB	[文件列表]
hppa （非官方移植版）	2.2.1-5	3,910.1 kB	14,542.0 kB	[文件列表]
i386	2.2.1-5+b1	3,629.3 kB	15,219.0 kB	[文件列表]
ia64 （非官方移植版）	2.2.1-4+b3	4,617.6 kB	20,576.0 kB	[文件列表]
m68k （非官方移植版）	2.2.1-5+b1	3,452.0 kB	14,573.0 kB	[文件列表]
mips64el	2.2.1-5+b1	3,543.7 kB	14,549.0 kB	[文件列表]
ppc64 （非官方移植版）	2.2.1-5+b1	3,588.0 kB	14,251.0 kB	[文件列表]
ppc64el	2.2.1-5+b1	3,652.9 kB	14,187.0 kB	[文件列表]
riscv64	2.2.1-5+b1	3,821.9 kB	12,775.0 kB	[文件列表]
s390x	2.2.1-5+b1	3,246.2 kB	13,693.0 kB	[文件列表]
sparc64 （非官方移植版）	2.2.1-5+b1	3,383.5 kB	15,875.0 kB	[文件列表]
x32 （非官方移植版）	2.2.0-2	3,563.7 kB	14,217.0 kB	[文件列表]