Pakket: centrifuge (1.0.4.2-1 en anderen)

[ Bron: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere aan centrifuge gerelateerde pakketten

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.34) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet hppa, ia64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [niet hppa, ia64, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 11) [hppa]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet hppa]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

centrifuge downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.4.2-1	568,7 kB	1.781,0 kB	[overzicht]
arm64	1.0.4.2-1	520,8 kB	1.671,0 kB	[overzicht]
hppa (unofficial port)	1.0.3-11	597,6 kB	1.679,0 kB	[overzicht]
ia64 (unofficial port)	1.0.3-12	779,7 kB	3.011,0 kB	[overzicht]
mips64el	1.0.4.2-1	539,0 kB	1.903,0 kB	[overzicht]
ppc64el	1.0.4.2-1	578,0 kB	1.864,0 kB	[overzicht]
riscv64	1.0.4.2-1	589,5 kB	1.415,0 kB	[overzicht]