Pakket: tabix (1.20+ds-1)

[ Bron: htslib  ]

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Wetenschap: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

Andere aan tabix gerelateerde pakketten

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
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• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libhtscodecs2 (>= 1.3.0)

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• dep: liblzma5 (>= 5.1.1alpha+20120614)

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• dep: zlib1g (>= 1:1.1.4)

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tabix downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	471,4 kB	2.249,0 kB	[overzicht]
arm64	438,8 kB	2.249,0 kB	[overzicht]
armel	401,4 kB	2.062,0 kB	[overzicht]
armhf	404,8 kB	1.494,0 kB	[overzicht]
i386	517,3 kB	2.566,0 kB	[overzicht]
mips64el	430,6 kB	2.618,0 kB	[overzicht]
ppc64el	508,1 kB	3.017,0 kB	[overzicht]
riscv64	488,8 kB	1.893,0 kB	[overzicht]
s390x	462,5 kB	2.465,0 kB	[overzicht]