Pakket: tabix (1.21+ds-1)

[ Bron: htslib  ]

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Wetenschap: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

Andere aan tabix gerelateerde pakketten

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
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• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libhtscodecs2 (>= 1.3.0)

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• dep: liblzma5 (>= 5.1.1alpha+20120614)

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• dep: zlib1g (>= 1:1.1.4)

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tabix downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	484,1 kB	2.328,0 kB	[overzicht]
arm64	450,1 kB	2.316,0 kB	[overzicht]
armel	412,2 kB	2.249,0 kB	[overzicht]
armhf	414,8 kB	1.609,0 kB	[overzicht]
i386	528,0 kB	2.629,0 kB	[overzicht]
mips64el	446,6 kB	2.685,0 kB	[overzicht]
ppc64el	516,5 kB	3.084,0 kB	[overzicht]
riscv64	497,4 kB	1.920,0 kB	[overzicht]
s390x	472,7 kB	2.504,0 kB	[overzicht]