Pakket: tabix (1.11-4)

[ Bron: htslib  ]

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Wetenschap: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

Andere aan tabix gerelateerde pakketten

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [niet arm64, ppc64el]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  XZ-format compression library

• dep: zlib1g (>= 1:1.2.0)

  compressiebibliotheek - programma's

tabix downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	330,7 kB	1.087,0 kB	[overzicht]
arm64	308,5 kB	1.011,0 kB	[overzicht]
armel	293,1 kB	1.004,0 kB	[overzicht]
armhf	298,7 kB	728,0 kB	[overzicht]
i386	360,7 kB	1.200,0 kB	[overzicht]
mips64el	312,8 kB	1.240,0 kB	[overzicht]
mipsel	327,7 kB	1.215,0 kB	[overzicht]
ppc64el	358,6 kB	1.467,0 kB	[overzicht]
s390x	301,7 kB	1.151,0 kB	[overzicht]