Pakket: vcfanno (0.3.5+ds-2 en anderen)

Verwijzigingen voor vcfanno

Debian bronnen:

Het bronpakket vcfanno downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Andere aan vcfanno gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [niet alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libc6.1 (>= 2.34) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
dep: libgo22 [alpha, ppc64, sparc64, x32]

Runtime library for GNU Go applications

vcfanno downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.3.5+ds-2	625,6 kB	3.140,0 kB	[overzicht]
amd64	0.3.5+ds-2+b3	2.528,3 kB	7.618,0 kB	[overzicht]
arm64	0.3.5+ds-2+b3	2.167,3 kB	7.282,0 kB	[overzicht]
armel	0.3.5+ds-2+b3	2.150,3 kB	7.421,0 kB	[overzicht]
armhf	0.3.5+ds-2+b3	2.142,7 kB	7.357,0 kB	[overzicht]
i386	0.3.5+ds-2+b3	2.325,6 kB	7.334,0 kB	[overzicht]
mips64el	0.3.5+ds-2+b3	1.943,9 kB	8.325,0 kB	[overzicht]
ppc64 (unofficial port)	0.3.5+ds-2	727,7 kB	4.594,0 kB	[overzicht]
ppc64el	0.3.5+ds-2+b3	2.155,0 kB	7.537,0 kB	[overzicht]
riscv64	0.3.5+ds-2+b3	2.154,8 kB	7.217,0 kB	[overzicht]
s390x	0.3.5+ds-2+b3	2.304,8 kB	8.114,0 kB	[overzicht]
sparc64 (unofficial port)	0.3.5+ds-2	606,9 kB	4.930,0 kB	[overzicht]
x32 (unofficial port)	0.3.5+ds-2	647,4 kB	2.660,0 kB	[overzicht]