Pakket: vcfanno (0.3.5+ds-2 en anderen)

[ Bron: vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Andere aan vcfanno gerelateerde pakketten

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

vcfanno downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.3.5+ds-2+b8	2.621,3 kB	8.040,0 kB	[overzicht]
arm64	0.3.5+ds-2+b8	2.233,5 kB	7.560,0 kB	[overzicht]
armel	0.3.5+ds-2+b8	2.312,6 kB	7.827,0 kB	[overzicht]
armhf	0.3.5+ds-2+b8	2.306,5 kB	7.827,0 kB	[overzicht]
i386	0.3.5+ds-2+b8	2.499,6 kB	7.780,0 kB	[overzicht]
mips64el	0.3.5+ds-2+b8	2.095,4 kB	8.859,0 kB	[overzicht]
ppc64el	0.3.5+ds-2+b8	2.227,6 kB	7.880,0 kB	[overzicht]
riscv64	0.3.5+ds-2+b8	2.324,3 kB	7.624,0 kB	[overzicht]
s390x	0.3.5+ds-2+b8	2.385,3 kB	8.520,0 kB	[overzicht]