Pakket: vcfanno (0.3.2+ds-2 en anderen)
Verwijzigingen voor vcfanno
Debian bronnen:
Het bronpakket vcfanno downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Nilesh Patra (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special cases of ID and FILTER to pull from those VCF columns. * For BED, values are pulled from (1-based) column number. * For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
Andere aan vcfanno gerelateerde pakketten
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- dep: libc6 (>= 2.17) [arm64, ppc64el]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.3.6-6~) [i386]
- dep: libc6 (>= 2.4) [niet arm64, i386, ppc64el]
vcfanno downloaden
Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
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amd64 | 0.3.2+ds-2+b6 | 2.103,4 kB | 6.786,0 kB | [overzicht] |
arm64 | 0.3.2+ds-2+b6 | 1.785,3 kB | 6.321,0 kB | [overzicht] |
armel | 0.3.2+ds-2+b6 | 1.821,7 kB | 5.766,0 kB | [overzicht] |
armhf | 0.3.2+ds-2+b6 | 1.814,7 kB | 5.766,0 kB | [overzicht] |
i386 | 0.3.2+ds-2+b6 | 1.980,7 kB | 5.764,0 kB | [overzicht] |
mips64el | 0.3.2+ds-2+b6 | 1.671,5 kB | 6.915,0 kB | [overzicht] |
mipsel | 0.3.2+ds-2+b6 | 1.695,4 kB | 6.442,0 kB | [overzicht] |
ppc64el | 0.3.2+ds-2+b6 | 1.746,0 kB | 6.321,0 kB | [overzicht] |
s390x | 0.3.2+ds-2+b6 | 1.922,7 kB | 6.708,0 kB | [overzicht] |