Pakket: tree-ppuzzle (5.3~rc16+dfsg-12 en anderen)

[ Bron: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Andere aan tree-ppuzzle gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [niet armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin [niet ia64]

  Standard MPI runtime programs (metapackage)

• dep: openmpi-bin [ia64]

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Pakket niet beschikbaar

tree-ppuzzle downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	5.3~rc16+dfsg-12+b1	183,1 kB	557,0 kB	[overzicht]
amd64	5.3~rc16+dfsg-12+b1	183,4 kB	441,0 kB	[overzicht]
arm64	5.3~rc16+dfsg-12+b1	167,8 kB	429,0 kB	[overzicht]
armel	5.3~rc16+dfsg-12	176,1 kB	451,0 kB	[overzicht]
armhf	5.3~rc16+dfsg-12	167,1 kB	331,0 kB	[overzicht]
hppa (unofficial port)	5.3~rc16+dfsg-12	173,1 kB	436,0 kB	[overzicht]
i386	5.3~rc16+dfsg-12	196,1 kB	539,0 kB	[overzicht]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	233,7 kB	860,0 kB	[overzicht]
m68k (unofficial port)	5.3~rc16+dfsg-12	164,9 kB	451,0 kB	[overzicht]
mips64el	5.3~rc16+dfsg-12+b1	185,6 kB	575,0 kB	[overzicht]
ppc64 (unofficial port)	5.3~rc16+dfsg-12+b1	196,3 kB	557,0 kB	[overzicht]
ppc64el	5.3~rc16+dfsg-12+b1	193,8 kB	557,0 kB	[overzicht]
riscv64	5.3~rc16+dfsg-12+b1	186,8 kB	385,0 kB	[overzicht]
s390x	5.3~rc16+dfsg-12+b1	196,9 kB	492,0 kB	[overzicht]
sh4 (unofficial port)	5.3~rc16+dfsg-12	198,7 kB	428,0 kB	[overzicht]
sparc64 (unofficial port)	5.3~rc16+dfsg-12+b1	168,1 kB	1.071,0 kB	[overzicht]
x32 (unofficial port)	5.3~rc16+dfsg-12	178,9 kB	419,0 kB	[overzicht]