Paketti: tree-ppuzzle (5.3~rc16+dfsg-12 ja muut)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Muut pakettiin tree-ppuzzle liittyvät paketit

• dep: libc6 (>= 2.34) [ei alpha, ia64, sh4]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [ei armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin [ei ia64]

  Standard MPI runtime programs (metapackage)

• dep: openmpi-bin [ia64]

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Paketti ei saatavilla

Imuroi tree-ppuzzle

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	5.3~rc16+dfsg-12+b1	183.1 kt	557.0 kt	[tiedostoluettelo]
amd64	5.3~rc16+dfsg-12+b1	183.4 kt	441.0 kt	[tiedostoluettelo]
arm64	5.3~rc16+dfsg-12+b1	167.8 kt	429.0 kt	[tiedostoluettelo]
armel	5.3~rc16+dfsg-12	176.1 kt	451.0 kt	[tiedostoluettelo]
armhf	5.3~rc16+dfsg-12	167.1 kt	331.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	5.3~rc16+dfsg-12	173.1 kt	436.0 kt	[tiedostoluettelo]
i386	5.3~rc16+dfsg-12	196.1 kt	539.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	5.3~rc16+dfsg-9+b1	233.7 kt	860.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	5.3~rc16+dfsg-12	164.9 kt	451.0 kt	[tiedostoluettelo]
mips64el	5.3~rc16+dfsg-12+b1	185.6 kt	575.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	5.3~rc16+dfsg-12+b1	196.3 kt	557.0 kt	[tiedostoluettelo]
ppc64el	5.3~rc16+dfsg-12+b1	193.8 kt	557.0 kt	[tiedostoluettelo]
riscv64	5.3~rc16+dfsg-12+b1	186.8 kt	385.0 kt	[tiedostoluettelo]
s390x	5.3~rc16+dfsg-12+b1	196.9 kt	492.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	5.3~rc16+dfsg-12	198.7 kt	428.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	5.3~rc16+dfsg-12+b1	168.1 kt	1,071.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	5.3~rc16+dfsg-12	178.9 kt	419.0 kt	[tiedostoluettelo]