Package: tree-ppuzzle (5.3~rc16+dfsg-12 and others)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to tree-ppuzzle

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [not armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: mpi-default-bin [not ia64]

  Standard MPI runtime programs (metapackage)

• dep: openmpi-bin [ia64]

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

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• sug: treetool

  Package not available

Download tree-ppuzzle

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-12+b1	183.1 kB	557.0 kB	[list of files]
amd64	5.3~rc16+dfsg-12+b1	183.4 kB	441.0 kB	[list of files]
arm64	5.3~rc16+dfsg-12+b1	167.8 kB	429.0 kB	[list of files]
armel	5.3~rc16+dfsg-12	176.1 kB	451.0 kB	[list of files]
armhf	5.3~rc16+dfsg-12	167.1 kB	331.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-12	173.1 kB	436.0 kB	[list of files]
i386	5.3~rc16+dfsg-12	196.1 kB	539.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	233.7 kB	860.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-12	164.9 kB	451.0 kB	[list of files]
mips64el	5.3~rc16+dfsg-12+b1	185.6 kB	575.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-12+b1	196.3 kB	557.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-12+b1	193.8 kB	557.0 kB	[list of files]
riscv64	5.3~rc16+dfsg-12+b1	186.8 kB	385.0 kB	[list of files]
s390x	5.3~rc16+dfsg-12+b1	196.9 kB	492.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-12	198.7 kB	428.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-12+b1	168.1 kB	1,071.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-12	178.9 kB	419.0 kB	[list of files]