Pakket: prime-phylo (1.0.11-13 en anderen)

[ Bron: prime-phylo  ]

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Andere aan prime-phylo gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-mpi1.74.0 (>= 1.74.0+ds1) [x32]

  C++ interface to the Message Passing Interface (MPI)

• dep: libboost-mpi1.83.0 (>= 1.83.0) [niet x32]

  C++ interface to the Message Passing Interface (MPI)

• dep: libboost-serialization1.74.0 (>= 1.74.0+ds1) [x32]

  serialization library for C++

• dep: libboost-serialization1.83.0 (>= 1.83.0) [niet x32]

  serialization library for C++

• dep: libc6 (>= 2.34) [hppa, m68k]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [niet alpha, hppa, ia64, m68k, sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libopenmpi3t64 (>= 4.1.6) [hppa, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [niet hppa, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 13.1) [hppa, ia64, m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [niet alpha, hppa, ia64, m68k, sh4]

  dep: libstdc++6 (>= 14.2.0-8) [alpha]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: libxml2 (>= 2.7.4)

  GNOME XML library

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: mrbayes

  Bayesian Inference of Phylogeny

• sug: muscle

  Multiple alignment program of protein sequences

• sug: njplot

  phylogenetic tree drawing program

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: probalign

  multiple sequence alignment using partition function posterior probabilities

• sug: python3-biopython

  Python3 library for bioinformatics

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: treeviewx

  Displays and prints phylogenetic trees

prime-phylo downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.11-13+b1	742,4 kB	3.598,0 kB	[overzicht]
amd64	1.0.11-13+b1	825,4 kB	3.160,0 kB	[overzicht]
arm64	1.0.11-13+b1	727,5 kB	3.319,0 kB	[overzicht]
hppa (unofficial port)	1.0.11-11	818,0 kB	3.309,0 kB	[overzicht]
ia64 (unofficial port)	1.0.11-11	892,6 kB	5.266,0 kB	[overzicht]
m68k (unofficial port)	1.0.11-11	789,0 kB	2.992,0 kB	[overzicht]
mips64el	1.0.11-13+b1	712,7 kB	3.703,0 kB	[overzicht]
ppc64 (unofficial port)	1.0.11-13+b1	802,8 kB	4.088,0 kB	[overzicht]
ppc64el	1.0.11-13+b1	808,5 kB	3.767,0 kB	[overzicht]
riscv64	1.0.11-13+b1	794,1 kB	2.527,0 kB	[overzicht]
s390x	1.0.11-13+b1	789,2 kB	3.159,0 kB	[overzicht]
sh4 (unofficial port)	1.0.11-11	908,2 kB	3.255,0 kB	[overzicht]
sparc64 (unofficial port)	1.0.11-13+b1	650,8 kB	13.513,0 kB	[overzicht]
x32 (unofficial port)	1.0.11-12	842,2 kB	2.935,0 kB	[overzicht]