Pakket: mafft (7.505-1 en anderen)

[ Bron: mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

Andere aan mafft gerelateerde pakketten

• dep: libc6 (>= 2.29) [niet alpha, arm64, ia64, riscv64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.33) [sh4]

  dep: libc6 (>= 2.34) [arm64, riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.33) [ia64]

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• rec: blast2

  Pakket niet beschikbaar

• rec: libwww-perl

  simple and consistent interface to the world-wide web

• rec: lynx

  classic non-graphical (text-mode) web browser

• rec: ruby

  Interpreter of object-oriented scripting language Ruby (default version)

• enh: t-coffee

  Multiple Sequence Alignment

mafft downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	7.505-1	1.032,8 kB	15.184,0 kB	[overzicht]
amd64	7.505-1	1.052,5 kB	11.920,0 kB	[overzicht]
arm64	7.505-1+b1	937,9 kB	12.408,0 kB	[overzicht]
armel	7.505-1	916,0 kB	12.403,0 kB	[overzicht]
armhf	7.505-1	765,3 kB	9.139,0 kB	[overzicht]
hppa (unofficial port)	7.505-1	890,5 kB	11.092,0 kB	[overzicht]
i386	7.505-1	983,3 kB	13.119,0 kB	[overzicht]
ia64 (unofficial port)	7.505-1	1.103,2 kB	24.053,0 kB	[overzicht]
m68k (unofficial port)	7.505-1	968,3 kB	10.923,0 kB	[overzicht]
mips64el	7.505-1	873,9 kB	14.427,0 kB	[overzicht]
ppc64 (unofficial port)	7.505-1	1.036,3 kB	16.784,0 kB	[overzicht]
ppc64el	7.505-1	1.019,2 kB	16.336,0 kB	[overzicht]
riscv64	7.505-1+b1	1.085,5 kB	9.760,0 kB	[overzicht]
s390x	7.505-1	891,0 kB	13.010,0 kB	[overzicht]
sh4 (unofficial port)	7.505-1	879,0 kB	11.959,0 kB	[overzicht]
sparc64 (unofficial port)	7.505-1	1.056,5 kB	33.604,0 kB	[overzicht]
x32 (unofficial port)	7.505-1	1.041,3 kB	11.379,0 kB	[overzicht]