Pakket: ampliconnoise (1.29-15 en anderen)

[ Bron: ampliconnoise  ]

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Andere aan ampliconnoise gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [niet ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

  Shared libraries for MPICH

  dep: libmpich12 (>= 4.2.0) [x32]

• dep: libopenmpi3t64 (>= 4.1.6) [ia64]

  high performance message passing library -- shared library

• dep: libopenmpi40 (>= 5.0.6) [niet armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

  high performance message passing library -- shared library

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: mpi-default-bin [niet ia64]

  Standard MPI runtime programs (metapackage)

• rec: openmpi-bin [ia64]

  high performance message passing library -- binaries

ampliconnoise downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.29-15+b1	1.076,1 kB	2.528,0 kB	[overzicht]
amd64	1.29-15+b1	1.084,5 kB	2.052,0 kB	[overzicht]
arm64	1.29-15+b1	1.073,3 kB	2.400,0 kB	[overzicht]
armel	1.29-15	1.064,2 kB	1.966,0 kB	[overzicht]
armhf	1.29-15	1.059,0 kB	1.834,0 kB	[overzicht]
hppa (unofficial port)	1.29-15	1.066,4 kB	1.930,0 kB	[overzicht]
i386	1.29-15	1.081,3 kB	2.046,0 kB	[overzicht]
ia64 (unofficial port)	1.29-11	1.096,8 kB	2.314,0 kB	[overzicht]
m68k (unofficial port)	1.29-15	1.052,2 kB	1.914,0 kB	[overzicht]
mips64el	1.29-15+b1	1.072,8 kB	2.422,0 kB	[overzicht]
ppc64 (unofficial port)	1.29-15+b1	1.086,7 kB	2.592,0 kB	[overzicht]
ppc64el	1.29-15+b1	1.092,7 kB	2.592,0 kB	[overzicht]
riscv64	1.29-15+b1	1.079,0 kB	1.912,0 kB	[overzicht]
s390x	1.29-15+b1	1.097,6 kB	2.108,0 kB	[overzicht]
sh4 (unofficial port)	1.29-15	1.082,6 kB	2.386,0 kB	[overzicht]
sparc64 (unofficial port)	1.29-15+b1	1.065,3 kB	14.891,0 kB	[overzicht]
x32 (unofficial port)	1.29-15	1.079,1 kB	2.006,0 kB	[overzicht]