Pakket: ampliconnoise (1.29-13 en anderen)

[ Bron: ampliconnoise  ]

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Andere aan ampliconnoise gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [niet ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: openmpi-bin

  high performance message passing library -- binaries

ampliconnoise downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.29-13	1.076,0 kB	2.525,0 kB	[overzicht]
amd64	1.29-13	1.083,5 kB	2.049,0 kB	[overzicht]
arm64	1.29-13	1.072,2 kB	2.397,0 kB	[overzicht]
armel	1.29-13	1.064,8 kB	1.968,0 kB	[overzicht]
armhf	1.29-13	1.059,6 kB	1.832,0 kB	[overzicht]
hppa (unofficial port)	1.29-13	1.066,0 kB	1.932,0 kB	[overzicht]
i386	1.29-13	1.074,4 kB	2.012,0 kB	[overzicht]
ia64 (unofficial port)	1.29-11	1.096,8 kB	2.314,0 kB	[overzicht]
m68k (unofficial port)	1.29-13	1.053,6 kB	1.912,0 kB	[overzicht]
mips64el	1.29-13	1.071,5 kB	2.419,0 kB	[overzicht]
ppc64 (unofficial port)	1.29-13	1.085,7 kB	2.589,0 kB	[overzicht]
ppc64el	1.29-13	1.091,4 kB	2.589,0 kB	[overzicht]
riscv64	1.29-13	1.078,3 kB	1.905,0 kB	[overzicht]
s390x	1.29-13	1.096,4 kB	2.105,0 kB	[overzicht]
sh4 (unofficial port)	1.29-13	1.081,3 kB	2.384,0 kB	[overzicht]
sparc64 (unofficial port)	1.29-13	1.064,5 kB	14.888,0 kB	[overzicht]
x32 (unofficial port)	1.29-13	1.080,3 kB	2.012,0 kB	[overzicht]