Pakket: abyss (2.3.10-1 en anderen)

[ Bron: abyss  ]

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program

Andere aan abyss gerelateerde pakketten

• dep: bsdextrautils [niet hppa, sparc64]

  extra utilities from 4.4BSD-Lite

• dep: bsdmainutils [hppa, sparc64]

  Transitional package for more utilities from FreeBSD

• dep: libc6 (>= 2.11) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.29) [sparc64]

  dep: libc6 (>= 2.32) [m68k, sh4]

  dep: libc6 (>= 2.34) [x32]

  dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.33) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, loong64, mips64el, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:4.3) [sparc64]

  Pakket niet beschikbaar

• dep: libgcc4 (>= 4.1.1) [hppa]

  Pakket niet beschikbaar

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libopenmpi3 [sparc64]

  high performance message passing library -- shared library

  dep: libopenmpi3 (>= 4.1.2~rc1) [m68k, sh4]

  dep: libopenmpi3 (>= 4.1.4) [alpha, ia64, x32]

• dep: libopenmpi40 (>= 5.0.6) [amd64, arm64, loong64, mips64el, ppc64, ppc64el, riscv64]

  high performance message passing library -- shared library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 11) [m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 12) [alpha, ia64, x32]

  dep: libstdc++6 (>= 14) [amd64, arm64, loong64, mips64el, ppc64, ppc64el, riscv64]

  dep: libstdc++6 (>= 5.2) [hppa]

  dep: libstdc++6 (>= 9) [sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: make

  utility for directing compilation

• dep: openmpi-bin [niet hppa]

  high performance message passing library -- binaries

• dep: openmpi-common [niet hppa]

  high performance message passing library -- common files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: openmpi-bin

  high performance message passing library -- binaries

abyss downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.3.5+dfsg-2	3.091,4 kB	12.135,0 kB	[overzicht]
amd64	2.3.10-1+b1	3.246,5 kB	10.021,0 kB	[overzicht]
arm64	2.3.10-1+b1	3.000,6 kB	10.681,0 kB	[overzicht]
hppa (unofficial port)	2.1.0-1	2.719,4 kB	9.671,0 kB	[overzicht]
ia64 (unofficial port)	2.3.5+dfsg-2	3.493,2 kB	17.029,0 kB	[overzicht]
loong64 (unofficial port)	2.3.10-1+b2	3.063,8 kB	9.673,0 kB	[overzicht]
m68k (unofficial port)	2.3.3-2	3.040,2 kB	9.799,0 kB	[overzicht]
mips64el	2.3.10-1+b1	3.135,6 kB	12.561,0 kB	[overzicht]
ppc64 (unofficial port)	2.3.10-1+b1	3.152,9 kB	13.053,0 kB	[overzicht]
ppc64el	2.3.10-1+b1	3.163,1 kB	12.409,0 kB	[overzicht]
riscv64	2.3.10-1+b1	3.185,2 kB	8.245,0 kB	[overzicht]
sh4 (unofficial port)	2.3.3-2	3.276,4 kB	9.167,0 kB	[overzicht]
sparc64 (unofficial port)	2.2.2-1	2.718,5 kB	9.131,0 kB	[overzicht]
x32 (unofficial port)	2.3.5+dfsg-2	3.104,9 kB	8.946,0 kB	[overzicht]